Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRK-IGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKY-PDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKL-RT-----------------------PYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYES
1K4M Chain:A ((1-213))
MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQ-PEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR-
General information:
TITO was launched using:
RESULT:
Template:
1K4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138970 for 1458 contacts (-95.3/contact) +
2D Compatibility (PS) -20309 + (NN) -9705 + (LL) 72
1D Compatibility (HY) -12400 + (ID) 3600
Total energy: -184912.0 ( -126.83 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_1K4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K4M-query.scw
PDB file :
Tito_Scwrl_1K4M.pdb
: