Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPAASRDPVARTSPLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFSWLSLKTLLSLALVGACITLGAYLGHK
3SP7 Chain:A ((2-162))
----EFMSQSNRELVVDFLSYKLSQKGYSWSQFSD-----------------------------------------------------ESEAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNA---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3SP7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99142 for 1087 contacts (-91.2/contact) +
2D Compatibility (PS) -15349 + (NN) -2372 + (LL) 3592
1D Compatibility (HY) -16000 + (ID) 4300
Total energy: -133571.0 ( -122.88 by residue)
QMean score : 0.288
(partial model without unconserved sides chains):
PDB file :
Tito_3SP7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SP7-query.scw
PDB file :
Tito_Scwrl_3SP7.pdb
: