Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MDTGPDQSYFSGNHWFVFSVYLLTFLVGLPLNLLALVVFVGKLRCRPVAVDVLLLNLTASDLLLLLFLPFRMVEAANGMHWPLPFILCPLSGFIFFTTIYLTALFLAAVSIERFLSVAHPLWYKTRPRLGQAGLVSVACWLLASAHCSVVYVIEFSGDISHSQGTNGTCYLEFWKDQLAILLPVRLEMAVVLFVVPLIITSYCYSRLVWILGRGGSHRRQRRVAGLVAATLLNFLVCFGPYNVSHVVGYICGESPVWRIYVTLLSTLNSCVDPFVYYFSSSGFQADFHELLRRLCGLWGQ----WQQESSMELKEQKGGEEQRADRPAERKTSEHSQGCGTGGQVACAEN------------- |
| 4XNV Chain:A ((38-382)) | SFKCALTKTGF--QFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWS-GISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPK-SLGRLKKKNAICISVLVWLIVVVAISP--ILFYSGTGVRKNKT-ITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKK---------YTCTVCGYIYNPEDGDPDN------GVNPGTDFKDIVCPLCGVGKDQFEEV--EEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202829 for 2313 contacts (-87.7/contact) +
2D Compatibility (PS) -33314 + (NN) -12018 + (LL) 1880
1D Compatibility (HY) -24400 + (ID) 3350
Total energy: -274031.0 ( -118.47 by residue)
QMean score : 0.190
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