Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPQILIFTYLNMFYFFPPLQILAENLTMVTEFLLLGFSSLGEIQLALFVVFLFLYLVI-LSGNVTIISVIHLDKSLHTPMYFFLGILSTSETFYTFVILPKMLINLLSVARTISFNCCALQMFFFLGFAITNCLLLGVMGYDRYAAICHPLHYPTLMSWQVCGKLAAACAIGGFLASLTVVNLVFSLPFCSANKVNHYFCDISAVILLACT--------NTDVNEFVIFICGVLVLVVPFLFICVSYLCILRTILKIPSAEGRRKAFSTCASHLSVVIVHYGCASFIYLRPTANYVSNKDR-------LVTVTYTIVTPLLNPMVYSLRNKDVQLAIRKVLGKKGSLKLYN-----------
1F88 Chain:A ((1-348))----MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLA----EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNF---------RFGENHAIMGVAFTWVMALACAAPPL---VGWSRYIPEG---MQCSCGIDYYTPHEETNNESFVIYMFVVH-FIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA


General information:
TITO was launched using:
RESULT:

Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -351381 for 2537 contacts (-138.5/contact) +
2D Compatibility (PS) -30400 + (NN) -221 + (LL) 2076
1D Compatibility (HY) -19200 + (ID) 2650
Total energy: -401776.0 ( -158.37 by residue)
QMean score : 0.264

(partial model without unconserved sides chains):
PDB file : Tito_1F88.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1F88-query.scw
PDB file : Tito_Scwrl_1F88.pdb: