Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | M--LQNQDTMEILSNSTSKFPTFLLTGIPGLESAHVWISIPFCCFYAIALS--GNSVILFVIITQQSLHEPMYYFLFRLSATDLGLTVSSLSTTLGILWFEAREISLYSCIVQMFFLHGFTFMESGVLVATAFDRYVAICDPLRYTTILTNSRIIQMGLLMITRAIVLILPLLLLLKPLYFCRMNALSHSYCYHPDVIQLACS-DI-RANSICGLIDLILTTGIDTPCIVLSYILIIHSVLRIA---------SPEEWHKVFSTCVSHVGAVAFFYIHMLSLSLVYRYGRSAP-RVVHSVMANVYLLLPPVLNPIIDSVKTKQIRKAMLSLLLTK------------------ |
| 1F88 Chain:A ((1-348)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSR---------------YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -269365 for 2524 contacts (-106.7/contact) +
2D Compatibility (PS) -30326 + (NN) 232 + (LL) 1000
1D Compatibility (HY) -22400 + (ID) 2850
Total energy: -323709.0 ( -128.25 by residue)
QMean score : 0.305
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