Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNWENESSPKEFILLGF-----------------SDRAWLQMPLFVVLLISYTITIFGNVSIMMVCILDPKLHTPMYFFLTNLSILDLCYTTTTVPHMLVNIGCNKKTISYAGCVAHLIIFLALGATECLLLAVMSFDRYVAVCRPLHYVVIMNYWFCLRMAAFSWLIGFGNSVLQSSLTLNMPRCGHQEVDHFFCEVPALLKLSCA-------DTKPIEAELFFFSVLILLIPVTLILISYGFIAQAVLKIRSAEG----RQKAFGTCGSHMIVVSLFYGTAIYMYLQPPSSTSKDWGK-------MVSLFYGIITSMLNSLIYSLRNKDMKEAFKRLMPRIFFCKK----------------------- |
| 1U19 Chain:A ((4-349)) | MN--GTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPI--NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAA--------PPLVGWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIM----MNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -240183 for 2279 contacts (-105.4/contact) +
2D Compatibility (PS) -29597 + (NN) -2177 + (LL) 1388
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -275169.0 ( -120.74 by residue)
QMean score : 0.173
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