Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGPRNQTAVSEFLLMKVTE---------------DPELKLIPFSLFLSMYLVTILGNLLILLAVISDSHLHTPMYFLLFNLSFTDICLTTTTVPKILVNIQAQNQSITYTGCLTQICLVLVFAGLESCFLAVMAYDRYVAICHPLRYTVLMNVHFWGLLILLSMFMSTMDALVQSLMVLQLSFCKNVEIPLFFCEVVQVIKLAC-------SDTLINNILIYFASSVFGAIPLSGIIFSYSQIVTSVLRMPSARG----KYKAFSTCGCHLSVFSLFYGTAFGVYISSAVAES-------SRITAVASVMYTVVPQMMNPFIYSLRNKEMKKALRKLI---------------------GRLFPF |
1U19 Chain:A ((4-349)) | --MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-----NFRFGENHAIMGVAFTWVMALACAAPPL-------VGWSRYIPEGMQC---SCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -270204 for 2290 contacts (-118.0/contact) +
2D Compatibility (PS) -29325 + (NN) 1830 + (LL) 1640
1D Compatibility (HY) -2400 + (ID) 1100
Total energy: -299559.0 ( -130.81 by residue)
QMean score : 0.212
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