Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLMNYSSATEFYL----------------LGFPGSEELHHILFAIFFFFYLVTLMGNTVIIMIVCVDKRLQSPMYFFLGHLSALEILVTTIIVPVMLWGLLLPGMQTIYLSACVVQLFLYLAVGTTEFALLGAMAVDRYVAVCNPLRYNIIMNRHTCNFVVLVSWVFGFLF-----QIWPVYVM--FQLTYCKSNVVNNFFCDRGQLLKLSCNNTLFTE-FILFLMAVFVLFGSLIPTIVSNAYIISTILKIPSSSGRRKSFSTCASHFTCVVIGYGSCLFLYVKPKQTQAA-------DYNWVVSLMVSVVTPFLNPFIFTLRNDKVIEALRDGVKRCCQLFRN------------------ |
1U19 Chain:A ((4-349)) | --MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH-GYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCG-----IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA------QQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -288862 for 2386 contacts (-121.1/contact) +
2D Compatibility (PS) -30344 + (NN) -2498 + (LL) 1488
1D Compatibility (HY) 1200 + (ID) 500
Total energy: -319516.0 ( -133.91 by residue)
QMean score : 0.195
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