Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AISCGTVSGALVPCLTYLKG----GPGP----------SPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSIS----GL-------KPGNVATLPGKCGVRLPYTISTSTNCNTIRF
2LVF Chain:A ((16-101))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS----------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23605 for 346 contacts (-68.2/contact) +
2D Compatibility (PS) -5924 + (NN) 461 + (LL) 1680
1D Compatibility (HY) -3600 + (ID) 500
Total energy: -31488.0 ( -91.01 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: