Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
IDCAQVNLLLGTCMPYLIG---FDSSP----------SLACCAGVRNLKRLAPTTADRRVACDCVKAAAAR-H------PN----IRDDAASTLPNKCGVDFNIPVSNTTKCQE
2LVF Chain:A ((16-101))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30720 for 345 contacts (-89.0/contact) +
2D Compatibility (PS) -6539 + (NN) -3167 + (LL) 1800
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -42326.0 ( -122.68 by residue)
QMean score : 0.285
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: