Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AIGCGAVVSYLNPCLPYVT----NKG-PL----------GGCCGGIKGLYGAAKTTPDRQSVCNCLKTLASS-Y------KG----VNLGKAAGLPGQCGVSIPYKISPSTDCSKVK
2LVF Chain:A ((16-101))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28866 for 322 contacts (-89.6/contact) +
2D Compatibility (PS) -5875 + (NN) 1608 + (LL) 1376
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -36457.0 ( -113.22 by residue)
QMean score : 0.220
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: