Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCQVTQLAPCASAISSSSPPSSQCCAKIKEQKPCLCQYMKNPSLKAYVSSPNAKKVANACGVPIPKC
M041 Chain:A ((1-104))
VTCQVTQLAPCASAISSSSPPSSQCCAKIKEQKPCLCQYMKNPSLKAYVSSPNAKKVANACGVPIPKC
General information:
TITO was launched using:
RESULT:
Template:
M041.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41392 for 466 contacts (-88.8/contact) +
2D Compatibility (PS) -7076 + (NN) -5013 + (LL) 0
1D Compatibility (HY) -8800 + (ID) 3400
Total energy: -65681.0 ( -140.95 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_M041.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-M041-query.scw
PDB file :
Tito_Scwrl_M041.pdb
: