Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------DQVCKGDFG--SLVEQCLQYV---QKPGPKTPPS-------EGCCNAINTVDIPCVCQHLPPVVGDIV-------SLEKVAFVLRACGKPLEPGTKCGNYTVPPAV
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMC----PAIMMMLNEPMWIRMRDQVMSMA----HNLP--IECNLMSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57593 for 491 contacts (-117.3/contact) +
2D Compatibility (PS) -7700 + (NN) -4809 + (LL) 16
1D Compatibility (HY) -6000 + (ID) 700
Total energy: -76786.0 ( -156.39 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: