Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSDLWNFFTEVPSEGYIVESSYCTDSGCSNYIGNIDLSNIREFNLVSPDRKITKKFEANIIDFFEPRVHLSMDDSGKKINLDIAPENCSATKDGFLCIDKNEQDYKLKILIKKS
3WWF Chain:A ((7-88))
------NTQTVLPFTGLNTPSGVAVDSAGTVYVTDRGNNRVVKLA---AGSNTQTVLPFT--GLNTPS-GVAVDSAGT-----------------VYVTDRGNN----RVVKLAA
General information:
TITO was launched using:
RESULT:
Template:
3WWF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2831 for 540 contacts (-5.2/contact) +
2D Compatibility (PS) -9043 + (NN) -5234 + (LL) 2164
1D Compatibility (HY) -1600 + (ID) 600
Total energy: -17144.0 ( -31.75 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_3WWF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WWF-query.scw
PDB file :
Tito_Scwrl_3WWF.pdb
: