Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEKKLKAAVVLSGCGHLDGAEVREVVLSLLVLDQQEVEVKCFAPDINITQVVNHKTT-EAVKEKRNVLVEAARVARSEI-------CDLKEAKAEDFDMLVVPGGYGVAKNLSDLAEDKEVVTVIPEFERLVSEFFATKKPIGAICISPAIIVS-ILSSKTSKGESKIKVTIGD--DREKLIEKLGGEHIKCDTGLSIEDEEHNVFSCSAYMRRDESTYSVYQGIKHMIDSMVKKTNKRI
1VHQ Chain:A ((6-212))
----MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVIN-HLTGEAMTETRNVLI-------EAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFP--------LRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAY-MLAQNIAEAASG-IDKLVSRVLVLAE--
General information:
TITO was launched using:
RESULT:
Template:
1VHQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105010 for 1743 contacts (-60.2/contact) +
2D Compatibility (PS) -20593 + (NN) -3924 + (LL) 1836
1D Compatibility (HY) -11200 + (ID) 3550
Total energy: -142441.0 ( -81.72 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_1VHQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHQ-query.scw
PDB file :
Tito_Scwrl_1VHQ.pdb
: