Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRLSQYYLPTLKEKPAHARIISHQY-SLRAGLIKQ--IASGIYTWLPLGLRVLKNIEGIIRDEMNKSGAIEALMPCVQPASLWRE-SGRYDDYGKTMLRIRDRH----EEDMLFGPTHEEVATDLIRDIVKSYKNLPLCLYQIQWKFRDEVRPRYGVMRGREFL-MKDAYSFNVNYESALNSYNLMYKTYIKIFKRMGLIPIGVRADTGLIGGNLSHEFHILASTGESTLYYDNKFFELLESEDVKSLKSIYAVADDIHDPKTCPVPQEQLNVSKGIEIGHIFYFGDKYSKPMNAKVTAQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGITWPEAVAPFRVGLINLQTKT--AEYVEIANKIYSTLKS-DEVLYDDTEGSIGVKFAKMDLIGLPWQIIVGKKAVSENIIEIKNRATGKVEEVQIEEAINYFNVK |
1NJ8 Chain:A ((6-372)) | ---------------------WYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRP--------EWDK-----------F-PG--AEYTMAFD-----------------TIFPD-------GRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGIS-DRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGKFRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKT |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NJ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182188 for 2849 contacts (-63.9/contact) +
2D Compatibility (PS) -37172 + (NN) -6788 + (LL) 4760
1D Compatibility (HY) -19600 + (ID) 4350
Total energy: -245338.0 ( -86.11 by residue)
QMean score : 0.429
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