Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MTIPEKMINLCYNSADSVSVEYSDVIVVKNLDPEQLEQYKSSSKLEFTLKFQNGKVEYKNSKVTLTIPEQLKNCKANGKSLLGDINEHFKDTDNEVVECLVD-KIADGLKSFIINPEDLNVDGSSIINKDDDAPVQILDSTEYGGTTEEQLLIQGIVNNVVGTLAGIVEVPIGMATDWVWPQDQK
3KRM Chain:A ((2-159))
QEMVQVFIPAQAVGAIIGK-----------------KGQHIKQLSRFASASIKIAPPETP---DSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGG---KTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQVKQ---------
General information:
TITO was launched using:
RESULT:
Template:
3KRM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44754 for 1086 contacts (-41.2/contact) +
2D Compatibility (PS) -15822 + (NN) -1745 + (LL) 2620
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -62401.0 ( -57.46 by residue)
QMean score : 0.205
(partial model without unconserved sides chains):
PDB file :
Tito_3KRM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KRM-query.scw
PDB file :
Tito_Scwrl_3KRM.pdb
: