Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVTLNTPKVDFNFTAKNFNLLGVDNKYYTLSDCCGKNGFIVMFI-CNHCPYVQSIISNLISDVDLLKKDYQVNTIAIMPNDVNEYPEDSFENM-INFAKENKFTFPYLIDSKQEVAKEYGAVCTPDFFGFNANLNLCYRGRFNDAKKEKIQNYEIGSSNLFQAMKFIAETGNSPINQKSSIGCSIKWSNSTG------
2CVB Chain:A ((2-188))
---LQYPELPLESPLIDAELPDPRGGRYRLSQ--FHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK--VAFVGINANDYEKYPEDA-PEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKD---PSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGNEPEVRIG
General information:
TITO was launched using:
RESULT:
Template:
2CVB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16327 for 1430 contacts (-11.4/contact) +
2D Compatibility (PS) -19249 + (NN) -5298 + (LL) 1296
1D Compatibility (HY) 4000 + (ID) 900
Total energy: -36478.0 ( -25.51 by residue)
QMean score : 0.156
(partial model without unconserved sides chains):
PDB file :
Tito_2CVB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CVB-query.scw
PDB file :
Tito_Scwrl_2CVB.pdb
: