Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIQIEETPNPNTLKFLPGFAILNERETADFSNPDEIKNSKLAADLFQIEHVIRVFFGHDFISVTKSDGISWDILKVEILTTVMDHFTSGGKALDRKGVNDNNIPDEEFFDENDIEIVNRIKELMENYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLCYHIPEVSGIETTL-----
1VEH Chain:A ((1-92))
-------------------------------------------------------------------------------------------------------GSSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVSGPSSG
General information:
TITO was launched using:
RESULT:
Template:
1VEH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45946 for 541 contacts (-84.9/contact) +
2D Compatibility (PS) -9074 + (NN) -2989 + (LL) 6208
1D Compatibility (HY) -6800 + (ID) 2150
Total energy: -60751.0 ( -112.29 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_1VEH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VEH-query.scw
PDB file :
Tito_Scwrl_1VEH.pdb
: