Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISKEDLLELMKIRHSRRSYGQSKLAHQEEINMLIETAWLSPSRYGDEPWRQVICNRQSNQDAWEKLLSCPTE---PNQKWAKDTQILIISLSTKNFHD--HT----------------------------------KIVNFWGSHDTGIANYTFMLQSYIYEFNAHQMSRFDRNKIVKNSIYQMILI
1VFR Chain:A ((2-176))
---THPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESD---AAKQRMHDSFANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFADELKGY
General information:
TITO was launched using:
RESULT:
Template:
1VFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21666 for 875 contacts (-24.8/contact) +
2D Compatibility (PS) -14845 + (NN) -8330 + (LL) 396
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -48745.0 ( -55.71 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_1VFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VFR-query.scw
PDB file :
Tito_Scwrl_1VFR.pdb
: