Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MYKALIT-CFIFLVCSFTRSYASDD---VHLEKSETELYEEAVELFDQKKYKQAIRAFR------------------KIEDLYPFSYWAMKAKLLSGISHYNMDDY-----------SSAASDMDDYIYIYPNGEDLPYV-----YYLRVLSYYMQINRVQ-LGQQTAYKALELAAEYVNL----FSESEYIEEMKEKVRLITDHILKKEYSIGKFYFR------RGEYLAAIKRFQNIISSKDYSYF---------PRSINYLIAAYSALGLD----LEAGQYESLLAENLKENTVEQ--- |
| 4NDN Chain:F ((15-323)) | IPNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETLGIGQRTPFRIGIKESLWPFLIDKRWRQTVFH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80312 for 1710 contacts (-47.0/contact) +
2D Compatibility (PS) -24118 + (NN) 4613 + (LL) 0
1D Compatibility (HY) -4000 + (ID) 1950
Total energy: -105767.0 ( -61.85 by residue)
QMean score : 0.192
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