Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFLNTIESQFDKVAEDYDFVNELLNDYSFFVSNMSPKKGRALDIGCGSGLLVEKLASYY--DEVVGIDISNQ-MLDLAKSKRQLTNTVYLNMNAEQLNFNEKFDFIVSRTTFHHLDDIASVIQQM-KELLNEEGRIVI------------L-DNVSEVETPPTYVYKLGAIQEFLPHCFKFGIKNAIRIYNHNT----SKSWLEHL-------------ASDKYLSEQNYYDLYEKLLP----GCQFHKMGWAMGVVWTK
2P35 Chain:A ((8-259))
-----AQQYLKFEDERTRPARDLLAQVP------LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNT---NFGKADLATWKPAQKADLLYANAVFQWVPDHLAVLSQLMDQ-LESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFKPLPPPSDYFNALSPKSSRVDVWHTVYNHPMKDADSIVEWVKGTGLRPYLAAAGEENREAFLADYTRRIAAAYPPMADGRLLLRFPRLFVVAVKK
General information:
TITO was launched using:
RESULT:
Template:
2P35.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127794 for 1482 contacts (-86.2/contact) +
2D Compatibility (PS) -22473 + (NN) -10459 + (LL) 1244
1D Compatibility (HY) -800 + (ID) 1600
Total energy: -161882.0 ( -109.23 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_2P35.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P35-query.scw
PDB file :
Tito_Scwrl_2P35.pdb
: