Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------MTLETLIKEQLDPHLVEVDEGTYYP--RTFIQQLFVDGYFGEAALRK----------NAEVIEAVSQSCLTTGFCLWCQLAF-STYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYV-DGQLVVSGRMPAVSNIQEDHYFGAISKHESSDE-----FVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQII--THDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNAQN------GINQYLEYDVEAFKKRYRQLREEYYAILDDGNL-TSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAAL--TPTLRHLGKLEAELKG |
| 1IVH Chain:A ((6-392)) | VDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEP-NAGSDVVSMKLKAEKKG-NHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNAD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171548 for 2972 contacts (-57.7/contact) +
2D Compatibility (PS) -36845 + (NN) -16502 + (LL) 132
1D Compatibility (HY) -9600 + (ID) 3000
Total energy: -237363.0 ( -79.87 by residue)
QMean score : 0.402
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