Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
3TYD Chain:B ((39-291))
--KTLIMGILNVTPD----GGSYNEVDAAVRHAKEMRDEGAHIIDIGGEST-------SVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVL--DLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAM-----------
General information:
TITO was launched using:
RESULT:
Template:
3TYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138582 for 2084 contacts (-66.5/contact) +
2D Compatibility (PS) -26885 + (NN) -20459 + (LL) 984
1D Compatibility (HY) -19200 + (ID) 5400
Total energy: -209542.0 ( -100.55 by residue)
QMean score : 0.719
(partial model without unconserved sides chains):
PDB file :
Tito_3TYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TYD-query.scw
PDB file :
Tito_Scwrl_3TYD.pdb
: