Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
4QF4 Chain:B ((7-141))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTMKLMYKGQPMTFRLLLVDTPETKHP---VEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
4QF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44064 for 1060 contacts (-41.6/contact) +
2D Compatibility (PS) -14018 + (NN) -3409 + (LL) 5924
1D Compatibility (HY) -15600 + (ID) 6450
Total energy: -77617.0 ( -73.22 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_4QF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QF4-query.scw
PDB file :
Tito_Scwrl_4QF4.pdb
: