Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSN-DDGTISDVELPYIEKRSQ-DVGITINAASNVSDVGKAFPGQPSIAHDSDIEGLKRLATAMKKNGAKALVQIHHGGAQALPELIPDGDVVAPSPISLKSFGQKQEHSAREMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWAN----QYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAG-QE-RLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK |
| 3GR7 Chain:A ((1-329)) | ---MNTMLFSPYTI-RGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHIAGLRELVGLVKEHGAAIGIQLAHAGRKSQVP----GEIIAPSAVPFD----DSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW------DGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMN-VYPGYQVPFAELIRREA--DIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAARELGAKIS--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GR7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136116 for 2933 contacts (-46.4/contact) +
2D Compatibility (PS) -34273 + (NN) -13788 + (LL) 976
1D Compatibility (HY) -15200 + (ID) 4700
Total energy: -203101.0 ( -69.25 by residue)
QMean score : 0.603
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