Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRQARPEDRFDIAKLVYMVWDDMELELVKHLPKDMVLDAIEKSCVDA--TYRTFYQHILVYEVENKVAGCIISYSGENELKYEKAWELLDLPEEIKQYGTPLPVKEAKDDEYYIETIATFAAYRGRGIATKLLTSLLES-NTHVKWSLNCDINNEAALKLYKKVGFISDGQIELYKHMYHHLIVK
3FNC Chain:A ((7-146))
HIRKATNSDAEAIQHVATTSWHHTYQDLIPS---DVQDDFLKRFYNVETLHNRISATPFAVLEQADKVIGFANFIELE-------------------------------KGKSELAAFYLLPEVTQRGLGTELLEVGMTLFHVPLPMFVNVEKGNETAIHFYKAKGFVQVEEFT------------
General information:
TITO was launched using:
RESULT:
Template:
3FNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82803 for 939 contacts (-88.2/contact) +
2D Compatibility (PS) -14804 + (NN) -7589 + (LL) 3772
1D Compatibility (HY) -4000 + (ID) 1450
Total energy: -106874.0 ( -113.82 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_3FNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FNC-query.scw
PDB file :
Tito_Scwrl_3FNC.pdb
: