Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ
2NSL Chain:A ((9-159))
-RVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSANRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEV--------
General information:
TITO was launched using:
RESULT:
Template:
2NSL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114872 for 1265 contacts (-90.8/contact) +
2D Compatibility (PS) -16049 + (NN) -4051 + (LL) 884
1D Compatibility (HY) -14800 + (ID) 3800
Total energy: -152688.0 ( -120.70 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_2NSL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NSL-query.scw
PDB file :
Tito_Scwrl_2NSL.pdb
: