Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDK-AKYITGQTIHVNGGMYM
4DMM Chain:D ((29-268))
----RIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIAT------------KLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM
General information:
TITO was launched using:
RESULT:
Template:
4DMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104140 for 2062 contacts (-50.5/contact) +
2D Compatibility (PS) -24644 + (NN) -2724 + (LL) 1304
1D Compatibility (HY) -26400 + (ID) 6950
Total energy: -163554.0 ( -79.32 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_4DMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DMM-query.scw
PDB file :
Tito_Scwrl_4DMM.pdb
: