Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELDGFNITIPHKERIIPYLDYVDEQAINAGAVNTVL-IKDGKWIGYNTDGIGYVKGLHSVYPDLENAYILILGAGGASKGIAYELAKFVKPKLTVANRTMARFE------SWNLNINQISLADAEKYLAEFDIVINTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHI-YNGLDMFVYQGAESFKIWTNKDADINSMKTAVLQQLKGE |
| 1NYT Chain:C ((4-269)) | --YAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLS-LDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGH--EFDLIINATSSGISGDIPAIPS-SLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEP----VIKQLQEE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124757 for 2185 contacts (-57.1/contact) +
2D Compatibility (PS) -27428 + (NN) -6501 + (LL) 1368
1D Compatibility (HY) -16000 + (ID) 4550
Total energy: -177868.0 ( -81.40 by residue)
QMean score : 0.504
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