Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLEIKDLVYKASDRIILDHISLKVDKGESIAIIGPSGSGKSTFQKQICNLISPTSGELYFKGKPYNDYDPEELRQRISYLMQQSDLFGETIEDNMIF--PSLARNDKFDRKR---AKQLIKDVGLGHYQLSSE-VENMSGGERQRIAIARQLMYTPDILLLDESTSALDVNNKEKIENIIFKLVEQDVAIMWITHSDDQSMRHFQKRITIVDGKISKVEELNQHE
1XEF Chain:D ((11-215))
---------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVI--IIAARLSTVKNADRIIVMEKGKI----------
General information:
TITO was launched using:
RESULT:
Template:
1XEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56455 for 1455 contacts (-38.8/contact) +
2D Compatibility (PS) -21553 + (NN) -7933 + (LL) 2388
1D Compatibility (HY) -17200 + (ID) 3400
Total energy: -104153.0 ( -71.58 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_1XEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XEF-query.scw
PDB file :
Tito_Scwrl_1XEF.pdb
: