Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSITIPIVIAFDNHYAIPAGVSLYSMLACAKSENPKSQNPQLQSDNKKLFYKIHCLV-DNLSLENQQKLKETLVPFSAFASVDFLDISTPNLYTTSVEPSVIDKIHEAFLQLNIYAKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYFGAAKDFSSPKSLKHFQTEREREPRQKFSLYEHYLKEKDMQIICENHYNVGFLIVNLKLWRADKLEEHLLNLTHQKG--QCVFCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFIPNQQEIIMLHFYFVGKPWILPTALYSKEWHEILLKTPFYAEYSVKFLKQMTECLSLQDKQKTFEFLAPLLNPKTLLEYVFFRLSKIFKRLKERFLNS |
1LL3 Chain:A ((1-266)) | MTDQAFVTLTTNDAYAKGALVLGSSLKQ------------------HRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKR-------PELGVTLTKLHCWS-----------------LTQYSKCVFMDADTLVLANIDDLFERE----ELSAAPDPGWP-----------------------------------DCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEMTHPQFLNVWWDIFTTSVVPLLQQFGL-------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LL3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199018 for 2141 contacts (-93.0/contact) +
2D Compatibility (PS) -27048 + (NN) -5454 + (LL) 9484
1D Compatibility (HY) -7600 + (ID) 2250
Total energy: -231886.0 ( -108.31 by residue)
QMean score : 0.358
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