Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADVVVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVHKGVKHSLHLMPSGVLYPKCKNIISSAVVVSVKDLCEEISAFEDLE----NRLFISDRAHVILPYHAKKDAFKEKS-QNIGTTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHFKAIEPFKKAY-DL----GENYEKDLMGYFKTYAPKICPFIKDTTSMLIEANQKGEKILLEGAQGTLLDIDLGTYPFVTSSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGVEFGTTTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKVCVAYER-KGERLEAFPSD---LKDCTPIYQTFKGWEKS-VGVRKLDDLEPNAREYIRFIEKEVGVKIGLISTSPEREDTIFL |
| 3HID Chain:A ((3-426)) | KNVVVLGTQWGDEGKGKVVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENVISIIGNGVVLAPDALMKEMTELEARGVPVRERLLLSEACPLILPYHVALDNAREKAR------GRGIGPAYEDKVARRGLRVSDLFNKETFAIKLKEIVEYH---NFQLVHYYKEAAVDYQK-VLDDVLAIADILTAMVVDVSELLDNARKQGELIMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGIVKAYSTRVGAGPFPTELNDETGEFLRKQGNEYGATTGRSRRTGWLDIVAVRRAVQINSLSGFCMTKLDVLDGLKEVKLCVGYRMPDGREVDTTPLAAEGWEGIEPIYETMPGWSETTFGVKEHSKLPQAALNYIQRVEELTGVPIDIISTGPDRDETMIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HID.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195582 for 3495 contacts (-56.0/contact) +
2D Compatibility (PS) -43110 + (NN) -10356 + (LL) 196
1D Compatibility (HY) -35600 + (ID) 8800
Total energy: -293252.0 ( -83.91 by residue)
QMean score : 0.528
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