Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDFKVPPKAKGFKRLFKALFYSKDGLKCAWAEESAFRQIVILALFCIVLASYLTKDFLEWGLLILPCFLSVVIELINSSIEKAVDFTGTEFHPLAKKAKDMASSAQLIGLIFWAFIWGRYLLTLYFN
4CJZ Chain:C ((25-121))
---------------------YSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDACTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWCILLWSH---
General information:
TITO was launched using:
RESULT:
Template:
4CJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54689 for 588 contacts (-93.0/contact) +
2D Compatibility (PS) -10349 + (NN) -6032 + (LL) 1452
1D Compatibility (HY) -9200 + (ID) 2050
Total energy: -80868.0 ( -137.53 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_4CJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CJZ-query.scw
PDB file :
Tito_Scwrl_4CJZ.pdb
: