Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLINEKLNNLENSATKSPKEAVVLLNMGGPNSLYEVGVFLKNMFDDPFILTIKNNFMRKMVGKMIVNSRIEKSKKIYEKLGGKSPLTPITF----ALTERLNELDPSRF---YTYAMRYTPPYASMVLQDLALKEIESLVFFSMYPQYSSTTTLSSFNDAF---NALKSLETFRPKVRVIERFYADKKLNEIILNTILSALNNC---KSQDFVLIFSVHGLPKSIVDAGDTYQQECEHHVSLLKELMQQKNIPFKEVLLSYQSKLGPMKWLEPSTEE----LIEKHRKSNIIIYPLAFTIDNSETLYELDMQY-RLMAERLAVKEYLVCPCLNDSIEFAKFIIELVKNLKSE |
| 3AQI Chain:B ((1-323)) | ----------------RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP---IQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTM--KWSTIDRWPTHHLLIQCFADAILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCN-PYR---LVWQSKVGPMPWLGPQTDESIKGLCERGRK-NILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQS |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3AQI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -161105 for 2442 contacts (-66.0/contact) +
2D Compatibility (PS) -32951 + (NN) -15986 + (LL) 1560
1D Compatibility (HY) -25200 + (ID) 5450
Total energy: -239132.0 ( -97.92 by residue)
QMean score : 0.481
|
|
|