Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVFKRLEKLFSKIQNDKVYGVEHGVEVVKSLASAKFDETVEVALRL-GVDPRHADQMVRGAVVLLHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEI--KNGRIDFDMVIATPDMMAVVGK-VGRILGPKGLMPNPKTGTV--TMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGK-YIRNAALSLTMSPSVNLDAQELMDIK
487D Chain:H ((1-224))
------KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLG-IDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD--GWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGF--NIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKG-TFLRSVYVTTTMGPSVRINPHS-----
General information:
TITO was launched using:
RESULT:
Template:
487D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120334 for 1674 contacts (-71.9/contact) +
2D Compatibility (PS) -23632 + (NN) -12638 + (LL) 1516
1D Compatibility (HY) -17200 + (ID) 5350
Total energy: -177638.0 ( -106.12 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_487D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-487D-query.scw
PDB file :
Tito_Scwrl_487D.pdb
: