Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELGFLGHYHPILLPLES---RIKNEFLHLGLSGANVTLPFKERAFQICDKIKGIALECASVNTLVLENDELVGYNTDALGFYLSLKHQNYQNDQNALILGAGGSAKALACGLQKQGLKVSVLNRSA-RGLDFFQRLGCDCF-MEPPKSAFDLIINATSASLHNE-LPLNKEVLKGYFKESKLAYDLAYGFL-TPFLSLAKELKIPFQDGKDMLIYQASLSFEKFSDSQIPYSKAFEVMRSVF
2D5C Chain:B ((4-244))
-----FAVLGHPVAHSLSPAMHAFAL----ESLGLEGSYEAWDTPLEALPGRLKE--VRRAFRGVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQVEGRLFGFNTDAPGFLEALKAGGIPLKGPALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKAREA-RLLVNATRVGL---ASPLPAEL----FPEEGAAVDLVYRPLWTRFLREAKAKGLKVQTGLPMLAWQGALAFRLWTGLLPDPSGMEEAARRAL
General information:
TITO was launched using:
RESULT:
Template:
2D5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151633 for 2037 contacts (-74.4/contact) +
2D Compatibility (PS) -24622 + (NN) -8348 + (LL) 1560
1D Compatibility (HY) -19200 + (ID) 4450
Total energy: -206693.0 ( -101.47 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_2D5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D5C-query.scw
PDB file :
Tito_Scwrl_2D5C.pdb
: