Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSNKKSNHLRAIYRALVIAIGLAVIIVFNYFNRKNNNARSSRRACSCFFSLTGVNLEKIGSFDTGAKLIVLNHQSLLDIIYLEAYHPSNICWIAKKELGEIPFYGHALTDTGMILIDREDKKGIVSLLKACKEKLDQNRPLVIFPEGTRGKGGEK-----FLPFKQGAKIIAEKFQLKIQPMVLINSIKIFN----SKPL--EAYKARTRLVMLESYTPDFSSPTWYEELQERMQKEYLKHYHELNA------- |
2CVH Chain:A ((1-220)) | ----MLSTGTKSLDSLL--GGGFAPGVLTQVYGPYA----SGKTTLALQTGLLS-----------GKKVAYVDTEG--------GFSPERLVQMAETR-GLNPEEALSR----FILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERH-RFRPEGLMAYFRITERGIEDVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -105390 for 1626 contacts (-64.8/contact) +
2D Compatibility (PS) -21137 + (NN) -3353 + (LL) 2404
1D Compatibility (HY) -8000 + (ID) 1750
Total energy: -137226.0 ( -84.39 by residue)
QMean score : 0.329
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