Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIKTYDIKEEELAKTAYATIKTNKGNITLELFYKDAPQAVSNFVTLA--KEGF-YNGLNFHRVIAGFVAQGG-CPYGTGTGGPEHRIKCEVAHNPN---KHQR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAESLSVLDKIKQGDIIESVVFSPSL
4DGC Chain:D ((18-144))
--------------------------GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFT----TGGKS--IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV--KEGMNIVEAMERFGSRNGKTSKKIT
General information:
TITO was launched using:
RESULT:
Template:
4DGC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61269 for 809 contacts (-75.7/contact) +
2D Compatibility (PS) -12318 + (NN) -6285 + (LL) 2188
1D Compatibility (HY) -8000 + (ID) 2550
Total energy: -88234.0 ( -109.07 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_4DGC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DGC-query.scw
PDB file :
Tito_Scwrl_4DGC.pdb
: