Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDYEKALAFIKSNSTLEQEEGTEVIFKQAQETARGNLDPFLLKDLKQHLGGTNDAIKEAPQEIQMPDFSNLEIATAAALQMRATMGSPNI------DLSNGVTTEYRVVEGDYG-DIPVRIYRHEEATKPVPAFIFYHGGGFVGGTPAVVENFCKGIAEKLPAVVINVDYHLAPEFPAPAAPKDCYRVLEWVVEQSNELGIDASKIGVSGDSAGGTLAAAVSYMDYEAETNYVGFQALLYPALTLVDEDNDKYQWDISKFGASEDTLPLVAPGIIGMNSSGELLRKAYVRDENPAAPIYSPLSAVDKSIYPPTLIASAEFDALRAFADVFAKELRASGVQTKAIVYQGMCHAFIDKYGIFPQAEDVADEIVQMMKEIF |
| 3QH4 Chain:A ((8-311)) | ---------------------------------VDRLDPLLRAVATARID--------------F------T--AESILTIRESMNQRRREAAATETAAAGVAVADDVVTGEAGRPVPVRIYRAAP--TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHPYPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDRPTA------SRSEFRATP--------AFDG-E-AASLMWRHYLAGQ-TPSPESVPGRRGQLAGLPATLITCGEIDPFRDEVLDYAQRLLGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3QH4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177135 for 2704 contacts (-65.5/contact) +
2D Compatibility (PS) -32004 + (NN) -15968 + (LL) 5120
1D Compatibility (HY) -10400 + (ID) 4450
Total energy: -234837.0 ( -86.85 by residue)
QMean score : 0.526
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