Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLDLWKWEMLLQGREFRN----KTNDNWQKLMDWSDFISTGLSAIYVYVNKADATLNNKIDTVDKAVNARVNELISGTEQLSEVVDARSDAFGARYPVLRERLNQEQLNFSKKSTIQFDASTIISMEKQDIGLLTSKKISEAQTVCFLNISSLDEEADIVLEKTGETSFSDNLTSLVFAKIGTNERYQMEPVGA |
1AK4 Chain:C ((401-545)) | ------PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAF-SPEVIPMFSAL-----SEGATPQDLNTMLN-TVGGHQAAMQMLKETINEEAAEWDRLHP-----VHAGP--IAPGQMREPRGSDIAGT------------------------TSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMY------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1AK4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -16775 for 998 contacts (-16.8/contact) +
2D Compatibility (PS) -14079 + (NN) 4845 + (LL) 4376
1D Compatibility (HY) -4800 + (ID) 900
Total energy: -27333.0 ( -27.39 by residue)
QMean score : 0.284
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