Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKNLYNYQEFIRLSHEGKIAYEQIDVPKNASLLTEKIDIDNHIYLVVDGYIALILNDGS-QNSKIYSIQGKGTFLNYFTLLDQSNNHFNFKTL-SGCS-LYKYSKADMEYFLSMFPENFGFQFFIMKNQTTHVYFKSLMA-SSPASEKLKT-TFSNMALL-HGVLSDDGTVILPQAIKTSHLLSYSNLSKSCFYKDLQYLKTTNQIEKKEKCWIIHDQALYTMIQNGQTSF
4RFA Chain:A ((10-225))
--EKLDTVLGYLKEFPDYYKYVTKKTYTLNEKIIFED-EKAKSIFFIVEGYAAVELEDNLRKTNYISIFVLPYNVLG---IDAFSSYPKHSITVMSESLMLYKIDADFLLNILSIKPDVN--DFLLTSIADVFARHYALLGMIAKTPKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLLTELVEEEFLINKKSPYRIDKDSLD----------
General information:
TITO was launched using:
RESULT:
Template:
4RFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70909 for 1435 contacts (-49.4/contact) +
2D Compatibility (PS) -21989 + (NN) -4672 + (LL) 1116
1D Compatibility (HY) -7600 + (ID) 1800
Total energy: -105854.0 ( -73.77 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_4RFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RFA-query.scw
PDB file :
Tito_Scwrl_4RFA.pdb
: