Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIKSQKSFSGTSQGALYLVPTPIGNLEDMTFRAIRMLKEADIIAAEDTRNTVKLLNHFEITTRMTSY-HQFTKENKEDNIIQRMLGGEVVALVSDAGMPSISDPGYELVQSALDANIPVIPLPGANAALTALIASGLAPQ------PFYFYGFLPRQNKERTQAIEKLAAREETWILYESPHRLKETLKAIIKI-TGNDRKIVLCRELTKRFEEFLRGTVEDALNWAMDEEIRGEFCLIIEGNSNPQLAEEQLWWQELDIKTHVSTVMEQENVSSKDAIKTVMKARNLPKREVYSAYHEIK |
| 2YBO Chain:A ((19-273)) | -------DVDFPAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYD-RLVARELIALLPESCQRIYVG---PQEEINELLVRLARQQRRVVRLK-GGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDLDWAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVALFAER----------AMAHPSYLG-------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YBO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131818 for 1989 contacts (-66.3/contact) +
2D Compatibility (PS) -25683 + (NN) -13870 + (LL) 4544
1D Compatibility (HY) -6400 + (ID) 1850
Total energy: -175077.0 ( -88.02 by residue)
QMean score : 0.415
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