Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRKSRWLLILLLLIVLVALSACEDSGNGDISGAPAKMEKQHFPPTDTKKGWIELLATDGISSQDNLPCVYEEAESVEKLEVHMKELSTASLTYIYIDGHIVQMEQGGDELSFQIQLSKTELRKGIHELAVVQYQENNPETKKVEFLKRANYEVKQIKND
3GM8 Chain:A ((84-162))
-----------------------------------------------------------------------------KVQILFEGVYL--NSEVWINGHWLGKRPNGY-ISFVYDLTP-YLQEGKNQI-AVKVDHS-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3GM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26533 for 299 contacts (-88.7/contact) +
2D Compatibility (PS) -5915 + (NN) 101 + (LL) 7148
1D Compatibility (HY) -4800 + (ID) 550
Total energy: -30549.0 ( -102.17 by residue)
QMean score : 0.122
(partial model without unconserved sides chains):
PDB file :
Tito_3GM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GM8-query.scw
PDB file :
Tito_Scwrl_3GM8.pdb
: