Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKNTPEALIDLFE-----ELKNLFETDTSLNNQNSSRLQEILTTATIRVRKASQTVELEARSVF--QNIHTLCFV---EKIHLNPEEANVLKEIEKIALSKGFWGGMNTLNVTNQFPSN-
4DFC Chain:B ((128-250))
MASTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRLTQRLAESFETALELSGGTAVVADMDDPKAEELLFSAN
General information:
TITO was launched using:
RESULT:
Template:
4DFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1639 for 744 contacts (-2.2/contact) +
2D Compatibility (PS) -11295 + (NN) 3257 + (LL) 0
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -14527.0 ( -19.53 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_4DFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DFC-query.scw
PDB file :
Tito_Scwrl_4DFC.pdb
: