Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLYTMKDLLAVGKEHQFAVPAFNICSFDMLKAIMEEVEANNAPVILEIHPDEIEYLG-DNFVATVREYAYRSKVPVVIHMDHGGTIKDVMRAIRNGYTSVMIDASRASYEENVALTTQVVELAHKVGVSVEAELGTIGNNGSAEGGADTIIYTDPDQAEDFVSRTGIDTLAVAIGTAHGLYPKDKKPELNMPLLKELNKRLDIPFVLHGGSGNPDKEVSESVQYGVRKVNLSSDLKSVFFEEVRRVLVDNPAMYEPNQVYPSANEKVKDVVRHKLDILNTTGQADKY
1GVF Chain:A ((2-285))
SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLG----------SAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYS--KTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRIS--
General information:
TITO was launched using:
RESULT:
Template:
1GVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168487 for 2360 contacts (-71.4/contact) +
2D Compatibility (PS) -30120 + (NN) -13364 + (LL) -244
1D Compatibility (HY) -23600 + (ID) 4950
Total energy: -240765.0 ( -102.02 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_1GVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GVF-query.scw
PDB file :
Tito_Scwrl_1GVF.pdb
: