Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIRLARIDDRLIHGQVATVWTKETQVERIIVISDDVAKDEVRKTLLTQVAPPGVKASVVDVQKGIRVYNNPKYATTPVMLLFTNPTDVLTLVEAGVNITTVNIGGMAFREG-KHMI---TNAVS--VDETDEA------AFRKL---DEKGIELEIRKVASDNKVKLIPLLDKDK
1DD9 Chain:A ((162-257))
---------------------------------------------------------------------------EPNRLLVVEGYMDVVALAQYGIN-YAVASLG-STTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLP--DGEDPDTLVRK--
General information:
TITO was launched using:
RESULT:
Template:
1DD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27098 for 455 contacts (-59.6/contact) +
2D Compatibility (PS) -8904 + (NN) -4668 + (LL) 6720
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -38800.0 ( -85.27 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_1DD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DD9-query.scw
PDB file :
Tito_Scwrl_1DD9.pdb
: