Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LVKVVFVCLGNICRSPMAEGLFRKEVANAGLTDEIKIDSAATGTWNLGKPPHRGTQEVLKKHG--VDYQAMRARKISDADFKEADFIIGMDQQNLADLNALNNNPDVIIRSLMSF--VSGQEDKDIPDPYY--TGDFDETERMVTEGVKALLAYITKK
1U2P Chain:A ((5-156))
-LHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQV----GTEHLAADLLVALDRNHARLLRQLGVEA-ARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDER
General information:
TITO was launched using:
RESULT:
Template:
1U2P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75026 for 1225 contacts (-61.2/contact) +
2D Compatibility (PS) -15676 + (NN) -4286 + (LL) 440
1D Compatibility (HY) -10000 + (ID) 2500
Total energy: -107048.0 ( -87.39 by residue)
QMean score : 0.670
(partial model without unconserved sides chains):
PDB file :
Tito_1U2P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U2P-query.scw
PDB file :
Tito_Scwrl_1U2P.pdb
: