Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMDDIVREGHPALREVATEVTFP--LSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKD-----RLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKENPSYLPPDVDVFG
1VEZ Chain:A ((5-158))
------ILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAE------------GVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGF--WEGCLSVP-GMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLK---------------
General information:
TITO was launched using:
RESULT:
Template:
1VEZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72927 for 1134 contacts (-64.3/contact) +
2D Compatibility (PS) -15857 + (NN) -5818 + (LL) 956
1D Compatibility (HY) -13200 + (ID) 2700
Total energy: -109546.0 ( -96.60 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_1VEZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VEZ-query.scw
PDB file :
Tito_Scwrl_1VEZ.pdb
: