Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIVESKLAGVKLVKPKVFGDHRGFFMESYNEKAFHEA--GIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIAYDDPDLNITWPTD---KLILSDKDTKHPRLKDAENNFVWENK
1OFN Chain:B ((16-182))
---------------PRVFADDRGLLILPYQEEAFVEAHGGPLFRVAQTIHSMS-KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYMLSRSYVTQDELALSALDPALGL--PIDIGVEPIVSDRDRVAITLAEAQRQ------
General information:
TITO was launched using:
RESULT:
Template:
1OFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47232 for 1206 contacts (-39.2/contact) +
2D Compatibility (PS) -17498 + (NN) -7556 + (LL) 2652
1D Compatibility (HY) -14400 + (ID) 2700
Total energy: -86734.0 ( -71.92 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_1OFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OFN-query.scw
PDB file :
Tito_Scwrl_1OFN.pdb
: